Nextflow workflow report

[sick_noyce] (resumed run)

Workflow execution completed successfully!
Run times
03-Aug-2021 13:40:42 - 04-Aug-2021 09:29:22 (duration: 19h 48m 40s)
  2061 succeeded  
  1 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run main.nf --primary_assembly /project/ag100pest/jennifer.chang/projects/2021-03-29_Pgos/00_Raw-Data/p_ctg.fasta --illumina_reads '/project/ag100pest/jennifer.chang/projects/2021-03-29_Pgos/00_Raw-Data/JAMU*{R1,R2}.fastq.bz2' --pacbio_reads /project/ag100pest/jennifer.chang/projects/2021-03-29_Pgos/00_Raw-Data/m54334U_190823_194159.subreads.bam --k 21 --clusterOptions '-N 1 -n 40 -t 24:00:00 -A isu_gif_vrsc' -resume
CPU-Hours
83.6 (0% cached)
Launch directory
/project/90daydata/isu_gif_vrsc/jenchang/polishCLR
Work directory
/project/90daydata/isu_gif_vrsc/jenchang/polishCLR/work
Project directory
/project/90daydata/isu_gif_vrsc/jenchang/polishCLR
Script name
main.nf
Script ID
48d2370e06151e47e0d31e4344d5e550
Workflow session
ad7a1e2f-0c5d-423e-951c-fd796d728a0d
Workflow profile
standard
Nextflow version
version 20.07.1, build 5412 (24-07-2020 15:18 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)